table of contents

adapted from
PLoS supp. material by Hermann Cuntz

→ a_tree_is_a_graph

Definitions

a tree is a graph
adjacency matrix
using graph theory
BCT formalism
sorted and equivalent tree
the "topological gene"
tree morphing
electrotonic signature
resampling a tree
MST rule
quadratic diameter taper
Nx1 vectors
obtaining some statistics

First steps

starting with TREES
exploration of a tree
visual exploration
code comments

Reference

contents
full function list
general remarks
graphtheory
edit
metrics
graphical
construct
electrotonics
IO

scheme
stacks
sample

GUI

starting the GUI
the vis_ panel
the stk_ panel
the thr_ panel
the skl_ panel
the mtr_ panel
the cat_ panel
the ged_ panel
the slt_ panel
the ele_ panel
the plt_ panel